FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423002
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12800.3025990420849074No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11140.26335572881452096No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10620.2510626427298216No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9740.2302589585864842No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8940.21134651845617752No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8420.19905343237147816No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8070.19077923981446898No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7850.18557831877863462No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7380.17446726020207942No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7200.1702119611727604No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7050.1666658786483279No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6870.1624105796190089No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6870.1624105796190089No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6410.15153592654408254No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6050.14302532848544453No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5830.13782440744961016No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5390.1274225653779415No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5090.12033040032907646No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5020.11867556181767462No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4910.11607510129975744No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4850.11465666828998444No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4560.10780090874274825No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4390.10378201521505809No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4300.1016543657003986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)