FastQCFastQC Report
Sun 21 May 2023
EGAF00007948949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423002
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44691.0564961867792588No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22970.5430234372414314No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19650.4645368107006586No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15960.3773031805996189No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13020.30779996312074176No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12470.29479766053115586No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10700.25295388674285224No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9310.2200935220164444No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9060.21418338447572352No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8410.1988170268698493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7650.18085020874605795No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6990.1652474456385549No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6860.16217417411738005No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6140.14515297800010402No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5910.13971565146264084No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5830.13782440744961016No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5460.1290774038893433No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5340.1262405378697973No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5080.12009399482744763No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4650.10992855825740777No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4620.10921934175252128No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4520.10685528673623293No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4470.10567325922808876No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4450.10520044822483107No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4380.10354560971342924No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4330.10236358220528509No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4310.10189077120202743No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)