FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499567
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40810.8169074418446375No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25110.5026352821543457No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17220.34469850890871495No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13330.26683107571156617No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12670.2536196346035667No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12420.24861530085053657No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11410.2283977924882949No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9530.1907652026655083No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8700.17415081460544832No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8020.16053902679720639No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7650.1531326128427218No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7350.14712741233908563No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7230.1447253321376312No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7170.14352429203690398No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC6760.13531718468193454No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6610.13231458443011648No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6280.1257088638761167No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6010.1203041834228442No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5680.11369846286884441No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5600.11209707606787478No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5070.10148788851145091No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5010.10028684841072368No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5010.10028684841072368No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5000.10008667506060248No Hit

[OK]Adapter Content

Adapter graph