FastQCFastQC Report
Wed 31 May 2023
EGAF00007948956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470943
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29060.6170598140326962No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA26660.5660982326948272No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG19960.4238304847932765No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15850.33655877675217594No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12710.26988404116846415No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11920.25310918731141563No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11910.2528968473891745No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9250.19641442807303644No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9060.19237996955045514No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8480.18006425406047016No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8190.17390639631547766No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8120.1724200168597898No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8030.17050895755961973No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7580.16095366105876932No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7060.14991198510223105No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6620.14056902852362174No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6520.13844562930121054No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6510.13823328937896945No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5640.11975971614399195No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5380.11423887816572281No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5360.11381419832124057No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5060.10744400065400696No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4860.10319720220918455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)