FastQCFastQC Report
Sun 21 May 2023
EGAF00007948957

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948957
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470943
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70491.4967841118776584No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46980.9975729546887839No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC20760.44081767857256615No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18800.3991990538133065No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC16240.3448400337195796No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12580.26712362217932956No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12440.2641508632679539No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9780.2076684439518158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9350.19853782729544767No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9220.19577740830631307No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8880.18855785095011499No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8610.18282467304960473No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7940.16859789825944965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7900.1677485385704852No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6880.14608986650189087No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6720.14269242774603297No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5750.12209545528864428No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5730.12167077544416204No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5640.11975971614399195No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5520.1172116370770985No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5180.1099920797209004No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA4950.10510826150935462No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4810.10213550259797896No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4800.10192316267573782No Hit

[OK]Adapter Content

Adapter graph