FastQCFastQC Report
Sun 21 May 2023
EGAF00007948959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447885
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35920.8019915826607277No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16790.37487301427821873No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7560.16879332864462976No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7510.16767697065094836No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7050.15740647710907935No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5560.1241390088973732No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4780.10672382419594315No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4650.10382129341237148No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4650.10382129341237148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)