FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460256
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31890.6928752694152819No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27340.5940172425780434No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18880.41020649377737606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13340.2898386984634638No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13070.2839723979698255No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12890.2800615309740666No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12530.2722397969825488No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12140.26376625182507124No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9130.19836786484043661No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8100.1759890148091497No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7920.1720781478133908No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7790.16925363276089828No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7680.1668636584857123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6870.14926475700479733No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6800.14774386428422442No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.14709205311826462No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5960.12949315163734965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5340.11602238754084683No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5300.11515330598623374No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5170.11232879093374122No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5160.11211152054508797No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5020.10906973510394216No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5000.1086351943266356No Hit

[OK]Adapter Content

Adapter graph