FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417590
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36290.8690342201681075No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9970.23875092794367683No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8880.2126487703249599No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7640.18295457266697No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7520.1800809406355516No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7340.17577049258842406No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7310.17505208458056945No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7110.17026269786153883No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6890.16499437247060514No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6670.15972604707967145No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6420.15373931368088317No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6390.15302090567302856No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6390.15302090567302856No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5900.14128690821140355No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5220.1250029933666994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)