FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948971

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948971
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478402
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29460.6158001011701456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27800.5811012495767158No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18400.3846137766982579No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16750.3501239543312946No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16210.3388363761021066No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14720.3076910213586064No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14620.3056007290939419No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12400.2591962408183912No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11590.2422648734746092No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11370.23766623049234745No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10750.2247064184514279No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8060.16847755653195431No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7420.15509968603810184No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7200.15050104305584008No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7020.14673851697944407No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6960.1454843416206454No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6800.14213987399718228No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6670.13942249405311852No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6340.13252452957972582No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6280.13127035422092717No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5890.12311821438873584No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4990.10430558400675582No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4930.10305140864795714No Hit

[OK]Adapter Content

Adapter graph