FastQCFastQC Report
Sun 21 May 2023
EGAF00007948973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468742
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32720.6980385798584295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13480.2875782413353188No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10310.21995042048717633No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9550.2037368104415649No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9120.19456332054733733No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8210.17514965588746048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8160.17408297101603867No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG8100.1728029491703325No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7280.1553093172790149No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6090.12992221733917592No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5490.11712199888211426No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5480.1169086619078299No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5210.11114856360215214No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4920.10496179134790568No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4820.10282842160506205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)