FastQCFastQC Report
Wed 31 May 2023
EGAF00007948974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486167
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT11090.2281109166191864No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT10640.2188548379466315No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10240.210627212459916No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9990.20548494653071886No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9660.1986971555041786No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9410.19355488957498143No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8880.18265328580508344No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8040.16537527228298096No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT7040.14480620856619228No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG6510.1339046047962943No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6230.12814526695559345No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5830.11991764146887798No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5830.11991764146887798No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5740.11806642573436699No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5680.11683228191135966No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5450.11210139725649829No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5430.1116900159821625No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5360.1102501815219873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)