FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486167
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA13060.2686319721412601No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11160.22955075107936163No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10590.21782638476079205No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG10500.2159751690262811No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10350.21288980946876282No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10200.20980444991124447No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10040.2065133997165583No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9750.20054837123868957No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9440.1941719614864851No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8680.1785394730617257No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8180.16825494120333137No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7060.14521758984052804No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6990.14377775538035284No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6560.1349330579821337No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6500.13369891415912638No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6430.1322590796989512No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6420.1320533890617833No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5950.12238592911489263No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5760.11847780700870278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5310.10922172833614788No Hit

[OK]Adapter Content

Adapter graph