FastQCFastQC Report
Wed 31 May 2023
EGAF00007948976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440775
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15350.3482502410526913No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13390.3037831092961262No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG13120.2976575350235381No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12940.2935738188418127No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12060.2736089841755998No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10400.2359480460552436No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10070.22846123305541374No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9470.21484884578299585No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9230.2094038908740287No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA8800.19964834666212922No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8070.18308660881402075No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7290.16539050535987748No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6600.1497362599965969No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5860.1329476490272815No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5710.12954455220917702No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5700.12931767908797007No Hit
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATGGGA5600.1270489478759004No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5440.12341897793658896No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5300.12024275423969145No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC4790.10867222505813623No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG4610.10458850887641086No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4580.10390788951278997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)