FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440775
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA28800.6533945890760592No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28360.6434121717429527No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15510.35188021099200273No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14420.32715104078044355No Hit
ATGTCCAACATGGACATCGATGGTATTAACA13510.3065055867506097No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13370.30332936305371216No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13310.3019681243264704No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9960.22596562872213713No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8790.19942147354092224No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8520.19329589926833418No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8190.18580908626850434No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7110.1613067891781521No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6310.1431569394815949No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6280.14247632011797404No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5810.13181328342124668No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG5790.13135953717883275No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5610.12727582099710735No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5270.11956213487607056No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5100.11570529181555214No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4580.10390788951278997No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4570.10368101639158302No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4500.10209290454313426No Hit

[OK]Adapter Content

Adapter graph