FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472133
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13760.2914433009342706No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12880.27280448517684636No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11690.24759972295942032No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8650.18321108670650008No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7950.16838475599036712No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6740.14275638432390872No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6730.14254457959939254No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6410.1357668284148746No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5740.12157591187229022No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4980.10547875280906016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4730.10018363469615553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)