FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440881
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG12580.28533776688040535No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11140.25267589213415864No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10580.2399740519550627No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8590.19483715560434675No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7000.15877300223869933No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6390.1449370691864698No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6340.14380297631333624No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6280.14244206486557598No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6220.14108115341781569No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5880.13336932188050746No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5190.11771884023126422No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5170.11726520308201079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)