FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948981

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948981
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440881
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38560.8746124237606065No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15230.3454446891564844No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14980.3397742247908166No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG12490.28329639970876497No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10880.24677860919386413No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9020.20459035431329545No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7730.17533075818644941No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6730.15264890072377807No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6690.1517416264252712No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6600.14970025925363079No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6280.14244206486557598No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5170.11726520308201079No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5040.11431656161186352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4770.10819246009694226No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4430.100480628559634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)