FastQCFastQC Report
Wed 31 May 2023
EGAF00007948984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427248
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23920.5598621877691645No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22230.5203067071115606No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14950.3499138673557278No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14630.3424240722016253No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14560.34078567951166533No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14030.328380706287683No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14010.3279125940905516No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12880.3014642549526271No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12010.2811013743774108No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11490.26893045725199416No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10170.23803505224132118No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9590.22445979852451034No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9580.22422574242594467No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9400.220012732651762No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8230.1926281691195746No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7930.18560648616260345No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7890.18467026176834064No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7710.18045725199415796No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7230.16922255926300414No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6780.15869003482754745No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6740.15775381043328465No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6510.15237052016627345No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6480.15166835187057634No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6250.14628506160356514No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6240.14605100550499944No Hit
TTTACCACGTTTGCTGCGGCCCTTACGAGACGGCAGTTTGCCAG6000.14043365913942255No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5750.13458225667527995No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5250.12287945174699472No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4930.11538965659289217No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4900.11468748829719508No Hit
ATCAGAGGATTTCGCATCGTTTTCTTTTTTATCCGGGGTTGCCA4880.11421937610006365No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG4840.11328315170580086No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4810.11258098341010374No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT4480.10485713215743549No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)