FastQCFastQC Report
Wed 31 May 2023
EGAF00007948985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427248
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37190.870454630565854No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34750.8133449425158222No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30970.724871737257986No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG24490.5732033853874097No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21130.49456053626933305No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16430.38455416994345204No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15470.36208478448114445No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14840.3473392502715051No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14680.3435943526944538No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14210.3325937160618657No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11970.28016514998314795No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11170.26144066209789163No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11020.25792982061940606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10650.249269744972475No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9190.21509755458188218No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8810.20620342283638543No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8570.20058607647080853No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8210.19216005692244317No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7700.18022319589559224No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7370.17249934464292402No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7130.16688199827734712No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6940.16243493240459872No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6710.15705164213758752No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6530.15283863236340486No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6520.15260457626483917No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6250.14628506160356514No Hit
TACCTGGAGACCCAGCAGAAAATCAACCACC6120.14324233232221098No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5750.13458225667527995No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5510.12896491030970303No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA5390.12615623712691457No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5180.12124105905703479No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG4920.11515560049432648No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4730.11070853462157809No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4370.10228251507321275No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4360.10204845897464705No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)