FastQCFastQC Report
Sun 21 May 2023
EGAF00007948989

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948989
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA42471.0453587744171393No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42141.0372361373660997No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36110.8888134057971014No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25640.6311042848141147No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19110.4703745274102079No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17000.4184388783868935No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16390.40342430686830494No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14650.3605958569628229No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14410.3546884845620668No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12400.3052142407057341No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11710.28823054505356016No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8300.20429662885948333No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7390.1818978418399496No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.1430076402016383No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5530.1361157057340895No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5210.12823920919974796No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA4560.11224007561436673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4420.10879410838059232No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4370.10756340579710146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)