FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948993

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948993
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396133
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36070.9105527688932756No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9520.24032332575170462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7140.18024249431377845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5830.14717279297609642No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.13505565050122056No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5010.12647267458151681No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4250.10728719899629671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)