FastQCFastQC Report
Wed 31 May 2023
EGAF00007948996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388728
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10580.27216974336811345No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9770.2513325512955074No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9750.2508180527258134No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9100.23409684921075918No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8500.2186618921199399No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8040.20682842501697848No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6360.16361054516268445No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5420.13942911238706757No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5180.13325512955073984No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5120.1317116338416579No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4860.12502315243563622No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4650.11962091745384947No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4590.11807742174476754No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4570.11756292317507357No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4540.1167911753205326No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4520.11627667675083862No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4160.10701570249634706No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG4030.10367146179333622No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)