FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948997

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948997
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388728
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33760.8684735856434318No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13550.3485727809676689No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11400.2932641847255665No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9730.25030355415611943No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9470.24361507275009775No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9300.23924183490769893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9030.23229610421683028No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8950.23023810993805438No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6060.1558930666172748No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5550.1427733530900784No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.14174435595069046No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5470.1407153588113025No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5010.12888189170834105No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4980.1281101438538001No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4640.11936366816900248No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4610.11859192031446152No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC4510.11601942746599164No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4390.11293243604782778No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC4060.10444320964787719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)