FastQCFastQC Report
Wed 31 May 2023
EGAF00007948999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435301
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA58761.3498705493440173No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39700.912012607368235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA28050.6443817036946848No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA25620.5885582619842362No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11560.2655633687953852No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11250.25844185977059553No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10920.2508608985506581No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10640.2444285678185899No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10270.23592870220835696No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG8740.200780609279556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8270.18998348269358445No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7810.17941608220518676No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7600.17459183415613563No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6240.14334908488609033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6130.14082209781277782No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5690.13071414951952787No Hit
ACTATCTACCAGTGCTATAACGCAGTTAAAA5600.1286466146413631No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5560.12772771025106763No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5520.1268088058607722No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5270.12106565342142564No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4840.11118743122574953No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4710.10820099195728931No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4620.10613345707912455No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4620.10613345707912455No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4440.10199838732279504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)