FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949000

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949000
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407023
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12830.3152156020667137No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11680.2869616704707105No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5830.14323514887365088No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5710.14028691253319836No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5550.13635593074592836No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5080.12480867174582272No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4840.1189121990649177No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG4140.10171415374561142No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4080.10024003557538518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)