FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949001

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949001
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407023
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29790.7318996715173344No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7720.18966987123577783No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7460.18328202583146408No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6080.14937730791626025No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5960.14642907157580776No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5950.14618338521410337No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5520.13561887166081524No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5310.13045945806502335No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5040.12382592629900521No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4510.11080454912867331No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4400.1081019991499252No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4210.10343395827754207No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4160.10220552646902019No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4120.10122278102220267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)