FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949003

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949003
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413958
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36760.8880127935684298No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC34540.8343841645770826No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33910.8191652293227816No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30660.7406548490426564No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18580.4488378048014533No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15250.36839486131443283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13660.3299851675773871No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12270.2964068818575798No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11070.267418433754149No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9930.23987940805588973No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9800.23673899284468472No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9600.23190758482744628No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8910.21523922716797356No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7940.191806898284367No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7030.169823991805932No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6750.16306002058179814No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6620.15991960537059316No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6620.15991960537059316No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC6340.1531556341464593No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6020.14542538131887775No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6010.14518381091801585No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA5950.14373438851284429No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5890.14228496610767274No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5660.13672884688784853No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5600.135279424482677No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5360.12948173486199083No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5350.1292401644611289No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5220.1260997492499239No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5100.12320090443958083No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4970.12006048922837582No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4740.1145043700085516No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4720.11402122920682774No Hit
GGTCGCCGTGTGCTGGTTGACGTCGAACGTG4640.11208866599993236No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4570.1103976731938989No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4440.1072572579826939No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4410.10653254678010812No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4270.10315056116804121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)