FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007949005

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949005
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416422
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37650.9041309056678082No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC35640.8558625624966981No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35470.8517801653130718No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30020.720903314426231No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17210.4132826795894549No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15620.37510025887200965No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13680.32851290277651035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11400.2737607523137586No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11330.2720797652381478No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10130.2432628439419627No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9890.2374994596827257No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9240.2218902939806254No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8950.21492620466738072No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8410.2019585900840974No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7010.1683388485718814No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6790.16305574633424746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6640.15945363117222433No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6290.15104869579417032No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA6200.14888742669695645No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6110.14672615759974256No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT6050.14528531153493332No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5920.14216347839451327No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5710.13712051716768087No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5610.13471910705966544No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5440.1306367098760392No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5390.1294360048220315No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5360.12871558178962686No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5170.12415290258439755No Hit
GGTCGCCGTGTGCTGGTTGACGTCGAACGTG5090.12223177449798522No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5090.12223177449798522No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4960.11910994135756515No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4910.11790923630355746No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4640.1114254290119158No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4600.11046486496870962No Hit
TCTAAAGGTGAAATCGTTCGTACCGATACTG4520.10854373688229729No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4400.10566204475267876No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4390.10542190374187724No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4360.1047014807094726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)