FastQCFastQC Report
Wed 31 May 2023
EGAF00007949007

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949007
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425586
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA10730.2521229551723976No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8740.20536389824853263No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7850.18445155620720607No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5290.12429920157148025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4640.10902614277725302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)