FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392906
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15710.39984118338737507No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6560.1669610542979746No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5460.13896453604678982No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5350.13616488422167136No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4900.12471176311891394No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4470.11376766962072353No Hit
TACCAGACCCAGGATGTGTTCGGACAGATAGCGCGGGTTATCGT4340.11045899019103805No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4330.11020447638875457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)