FastQCFastQC Report
Wed 31 May 2023
EGAF00007949009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392906
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34710.8834174077260211No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15890.40442243182847804No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10720.27283879604790967No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6260.15932564022946963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5730.14583640870844425No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5520.1404916188604908No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5470.13921904984907332No Hit
CGTGTTCACATGCTGATGCCAGGCTGGTACC4700.11962148707324398No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4550.11580378003899151No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4440.11300412821387304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)