FastQCFastQC Report
Sun 21 May 2023
EGAF00007949011

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949011
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396495
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25390.640361164705734No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18740.47264152133065995No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17700.44641168236673856No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12750.32156773729807436No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11360.2865105486828333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11060.27894424898170217No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11010.2776831990315136No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10080.25422766995800705No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9740.24565253029672504No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9390.23682518064540536No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8060.20328125197039054No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7500.18915749252827904No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7220.1820956128072233No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6990.17629478303635607No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6950.17528594307620524No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6760.17049395326548886No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6650.16771964337507408No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6170.15561356385326422No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5760.1452729542617183No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5460.13770665456058714No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5400.1361933946203609No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5070.12787046494911664No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4950.12484394506866417No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4770.12030416524798548No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4750.11979974526791007No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4480.11299007553689201No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4220.10643261579591166No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3980.10037957603500675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)