FastQCFastQC Report
Wed 31 May 2023
EGAF00007949012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393236
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11160.2837990417967836No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10250.2606577220803792No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9980.25379161623045704No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9740.2476884110305262No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8850.22505569174744938No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7490.19047086228117466No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6190.15741183411488266No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5560.14139092046506424No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5470.13910221851509016No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5370.13655921634845233No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4980.12664150789856474No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4950.1258786072485734No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4480.1139264970653755No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4320.10985769359875494No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)