FastQCFastQC Report
Sun 21 May 2023
EGAF00007949013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393236
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34260.871232542290126No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23060.5864162996266873No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12180.30973766389648966No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10300.26192922316369815No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9760.24819701146385378No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7400.18818216033120058No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6640.16885534386475298No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6530.16605804148145134No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6250.15893763541486539No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6180.15715753389821888No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5500.13986511916508154No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5440.13833931786509882No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4990.12689580811522852No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4630.11774100031533227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)