FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403089
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20880.5179997469541466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14480.35922587815594076No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12790.31729965342641453No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11510.28554487966677333No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11490.28504871132677895No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11010.2731406711669135No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC10650.26420964104701444No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10530.2612326310070481No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9790.24287440242725553No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9050.22451617384746297No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8110.2011962618677265No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8080.2004520093577349No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG7780.193009484257819No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG7190.1783725182279844No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6990.17341083482804046No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6230.1545564379082535No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5620.13942330353842453No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5410.1342135359684834No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5300.13148461009851423No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT5180.12850760005854786No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG4520.11213404483873288No Hit
ACCCGGGCGCTGGCCTTCTGCACCCCAGCTGAAACGGGACAGGG4320.10717236143878894No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4310.10692427726879175No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4170.103451098888831No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)