FastQCFastQC Report
Wed 31 May 2023
EGAF00007949017

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949017
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403089
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21870.5425600797838691No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18710.46416548206475494No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13880.34434082795610893No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12760.3165554009164229No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12690.31481881172644255No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11690.2900103947267229No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11650.2890180580467341No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG11570.28703338468675654No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11110.27562151286688547No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11110.27562151286688547No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9770.2423782340872611No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG9080.22526042635745455No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8790.21806598542753586No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8630.2140966387075807No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7600.18854396919786945No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7430.1843265383079171No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6630.16447980470814136No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5890.1461215761283488No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5650.1401675560484161No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5640.1399194718784189No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5580.13843096685843573No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC5470.13570204098846658No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5140.12751526337855906No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4900.12156124329862636No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4860.12056890661863756No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG4700.11659955989868243No Hit
TCTCTGCCGCAGAAATCTCACGGTCGCACTC4580.11362254985871607No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4330.10742044560878615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)