FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007949021

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949021
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379304
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34510.9098243097884546No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34110.8992786788433552No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26660.702866302490878No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20990.5533819838440933No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13830.36461518992681335No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11270.2971231518781769No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10490.27655917153523296No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6360.1676755320270812No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6270.1653027650644338No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.14342058085335246No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5370.14157509543796004No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5200.1370932022862928No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4970.1310294644928606No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4830.1273384936620758No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4800.12654757134119335No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG4650.12259295973678105No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4640.12232931896315356No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4270.11257461033893658No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4170.10993820260266171No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4050.10677451331913188No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4010.10571995022462194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)