FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949031

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949031
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471205
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28530.605468957247907No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16300.34592162646831No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG14230.3019917021254019No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9180.19481966447724453No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9150.19418299890705742No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5160.10950647807217664No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG5120.10865759064526055No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4890.103776487940493No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)