FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949041

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949041
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460063
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29380.638608190617372No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG12540.27257136522606684No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11770.2558345270104312No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7180.15606558232242107No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6710.14584959016482527No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6540.1421544440652693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5960.12954747501972558No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5240.11389744448042985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4980.10824604456346196No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)