FastQCFastQC Report
Wed 31 May 2023
EGAF00007949042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461931
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16540.3580621348210014No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8490.1837936834722069No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7850.1699388003836071No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7570.16387728903234466No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6940.1502388884920042No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6680.14461034223726055No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5750.12447746524913894No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5720.12382801760436084No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5690.1231785699595827No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5100.11040609961227976No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4840.1047775533575361No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)