FastQCFastQC Report
Sun 21 May 2023
EGAF00007949043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461931
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66751.4450210096313085No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16560.35849509991752015No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15850.34312483899110474No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10140.2195133039350033No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8910.1928859504991005No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6810.1474246153646324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6710.14525978988203866No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6250.13530159266210753No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6190.13400269737255133No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6180.13378621482429195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5830.12620932563521392No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5530.11971484918743276No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4760.1030456929714611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)