FastQCFastQC Report
Wed 31 May 2023
EGAF00007949047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444699
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66091.4861737939595099No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25330.5695987623088876No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18110.407241752286378No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15580.3503493374169944No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9270.2084556070510615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7860.1767487671436185No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7480.16820366135296008No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.12075583709430424No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5290.11895686745416563No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5220.11738276901904433No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5160.11603354178894038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)