FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496581
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30100.6061448182673118No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17070.3437505663728576No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15950.32119634057686464No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12430.2503116309323152No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8620.17358698782273185No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6710.13512397775992235No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5290.1065284414828598No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5150.10370916325836067No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5010.10088988503386155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)