FastQCFastQC Report
Wed 31 May 2023
EGAF00007949051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507449
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29700.5852804912414844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23500.46310072539309366No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18290.3604303092527525No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17380.3424974726524242No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16170.3186527118981415No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15960.3145143649903734No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15390.30328170909786006No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13450.2650512662356217No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12550.24731549377375855No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10730.21144982057310194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9460.18642267498802836No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9100.17932836600328309No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8630.1700663514954212No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8210.16178965767988507No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6510.1282887541408102No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6380.1257269203407633No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6380.1257269203407633No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6160.12139150929453009No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6140.1209973810175998No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5840.11508545686364541No Hit

[OK]Adapter Content

Adapter graph