FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949053

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949053
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471190
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66921.420233875931153No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21170.4492879730045205No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16390.34784269615229524No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15320.32513423459750845No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15040.3191918334429848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14370.30497251639466033No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13640.2894798276703665No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12590.2671958233409028No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11490.24385067594813134No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9450.20055603896517327No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8640.183365521339587No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8390.17805980602304802No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8060.17105626180521658No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7390.1568369447568921No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6230.13221842568815126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6060.12861053927290478No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6060.12861053927290478No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5910.12542711008298138No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5680.12054585199176554No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5630.11948470892845774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4900.10399202020416393No Hit

[OK]Adapter Content

Adapter graph