FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007949054

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949054
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520164
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12640.2430002845256496No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11510.22127636668435338No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10910.20974154305180676No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10810.20781907244638229No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8610.16552471912704456No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8480.16302550733999277No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8040.15456663667612522No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7800.14995270722310655No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6930.13322721295591392No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6570.12630631877638593No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6190.11900093047577302No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5550.1066971186010566No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5320.10227543620858037No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5260.10112195384532571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)