FastQCFastQC Report
Wed 31 May 2023
EGAF00007949055

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949055
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520164
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32570.6261486761867411No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23810.4577402511515599No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17140.32951146176974955No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13330.25626533170307825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11260.2164701901707923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8720.16763943679301144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8630.16590921324812943No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8580.1649479779454172No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8570.16475573088487477No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7670.1474534954360548No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6220.11957767165740037No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6070.1166939657492637No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5830.11208003629624504No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5670.10900408332756592No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5500.10573588329834437No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA5350.10285217739020772No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)