FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949059

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949059
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472047
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64311.3623643408389419No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30580.6478168487459935No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA17520.37114948299639655No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16650.3527191148339043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13970.29594510716093947No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13540.28683584473579965No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10290.2179867682667192No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8250.17477073257535794No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8100.17159308289216962No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7740.16396672365251763No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.15570483447622802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7170.15189165485640202No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7070.14977322173427646No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6510.13790999625037337No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6090.12901257713744607No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5740.12159806121000663No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5710.12096253127336896No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5240.11100589559937889No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4930.10443875292078966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)