FastQCFastQC Report
Sun 21 May 2023
EGAF00007949061

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949061
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500723
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG72721.4522999742372529No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13480.2692107212970045No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12580.2512367117148603No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10520.21009620089350797No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10490.20949706724076983No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10250.20470399801886474No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10090.20150861853759466No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9820.19611641566295138No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9520.19012507913556997No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8580.17135222468310823No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8440.1685562676369969No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7370.14718716735600323No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5900.11782961837183431No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5590.11163857062687355No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5560.1110394369741354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5460.1090423247983416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)