FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507083
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13010.2565654932230029No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12450.24552193625106736No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12230.2411833960120927No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10960.21613818645073885No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10510.20726389959829064No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9720.19168459601288151No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9440.18616281752691374No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9340.18419075378192526No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6630.13074782629273707No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6580.12976179442024283No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6520.12857855617324976No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6070.11970426932080153No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5840.11516852270732798No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5670.11181601434084756No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5510.10866071234886597No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5190.10235010836490278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)